{ "_id": "6a154fdeacfb0bcc41d59e3c", "Package": "barrks", "Type": "Package", "Title": "Calculate Bark Beetle Phenology Using Different Models", "Version": "1.1.2", "Date": "2025-08-29", "Description": "Calculate the bark beetle phenology based on raster data\nor point-related data. There are multiple models implemented\nfor two bark beetle species. The models can be customized and\ntheir submodels (onset of infestation, beetle development,\ndiapause initiation, mortality) can be combined. The following\nmodels are available in the package: PHENIPS-Clim (first-time\nrelease in this package), PHENIPS (Baier et al. 2007)\n, RITY (Ogris et al. 2019)\n, CHAPY (Ogris et al.\n2020) , BSO (Jakoby et al.\n2019) , Lange et al. (2008)\n, Jönsson et al. (2011)\n. The package may be expanded by\nmodels for other bark beetle species in the future.", "Authors@R": "c(\nperson(\"Jakob\", \"Jentschke\", email = \"jakob.jentschke@forst.bwl.de\",\nrole = c(\"aut\", \"cre\")),\nperson(\"FVA BW, Abt. Waldschutz\", email = \"waldschutz.fva-bw@forst.bwl.de\",\nrole = c(\"cph\", \"fnd\"))\n)", "URL": "https://jjentschke.github.io/barrks/,\nhttps://github.com/jjentschke/barrks/", "BugReports": "https://github.com/jjentschke/barrks/issues/", "License": "GPL (>= 3)", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "Roxygen": "list(markdown = TRUE)", "RdMacros": "Rdpack", "Collate": "'appearance.R' 'barrks-package.R' 'bso-phenology-results.R'\n'bso-phenology.R' 'utils.R' 'bso-plot.R' 'create-daylengths.R'\n'create-events.R' 'create-suntimes.R' 'data.R'\n'utils-model-functions.R' 'model.R' 'model-bso.R'\n'model-phenips.R' 'model-rity.R' 'model-chapy.R'\n'model-combine.R' 'model-joensson.R' 'model-lange.R'\n'model-phenips-clim.R' 'phenology-properties.R'\n'phenology-results.R' 'phenology.R'\n'plot-development-diagram.R' 'stations.R' 'utils-doc.R'\n'utils-log.R' 'utils-storage.R'", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "libgdal-dev gdal-bin libgeos-dev libicu-dev\nlibproj-dev libsqlite3-dev libx11-dev", "Repository": "https://jjentschke.r-universe.dev", "Date/Publication": "2025-08-29 10:18:24 UTC", "RemoteUrl": "https://github.com/jjentschke/barrks", "RemoteRef": "HEAD", "RemoteSha": "4f5e003a713503a3770e5d8b71c1674246143d58", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-26 07:42:34 UTC", "User": "root" }, "Author": "Jakob Jentschke [aut, cre],\nFVA BW, Abt. Waldschutz [cph, fnd]", "Maintainer": "Jakob Jentschke ", "MD5sum": "48b34b3a88148e8e5d8c6c2586735eb7", "_user": "jjentschke", "_type": "src", "_file": "barrks_1.1.2.tar.gz", "_fileid": "73421d9fbcc3ff27b223fab2a3999d2b1548100960b5da2c92b9d452e65c6872", "_filesize": 1913682, "_sha256": "73421d9fbcc3ff27b223fab2a3999d2b1548100960b5da2c92b9d452e65c6872", "_created": "2026-05-26T07:42:34.000Z", "_published": "2026-05-26T07:46:38.279Z", "_distro": "noble", "_jobs": [ { "job": 77829286750, "time": 206, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7211544912" }, { "job": 77829286738, "time": 202, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7211543436" }, { "job": 77829286773, "time": 161, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7211524876" }, { "job": 77829286776, "time": 201, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7211533354" }, { "job": 77828746653, "time": 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"tidyverse", "role": "Suggests" }, { "package": "tinytest", "role": "Suggests" }, { "package": "utils", "role": "Suggests" }, { "package": "viridisLite", "role": "Suggests" } ], "_owner": "jjentschke", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-35", "n": 2 } ], "_tags": [], "_stars": 0, "_contributors": [ { "user": "jjentschke", "count": 49, "uuid": 4560081 }, { "user": "gillessanmartin", "count": 4, "uuid": 4679586 } ], "_userbio": { "uuid": 4560081, "type": "user", "name": "Jakob Jentschke" }, "_downloads": { "count": 215, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/barrks" }, "_devurl": "https://github.com/jjentschke/barrks", "_pkgdown": "https://jjentschke.github.io/barrks/", "_searchresults": 14, "_rbuild": "4.6.0", "_assets": [ "extra/barrks.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", 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"get_input_data", "get_mortality_df", "get_mortality_rst", "get_onset_df", "get_onset_rst", "list_models", "load_phenology", "model", "model_combine", "params", "phenology", "plot_development_diagram", "prop_dates", "prop_filial_generations", "prop_first_date", "prop_hatched_generations", "prop_last_date", "prop_sister_broods", "prop_stations", "prop_year", "save_phenology", "stations_assign", "stations_cells", "stations_create", "stations_names" ], "_help": [ { "page": "analyse.phenology", "title": "Analyse a phenology", "topics": [ "analyse.phenology" ] }, { "page": "analyse.phenology.bso", "title": "Analyse a BSO generated phenology", "topics": [ "analyse.phenology.bso" ] }, { "page": "barrks_colors", "title": "Get 'barrks' default color palettes", "topics": [ "barrks_colors" ] }, { "page": "barrks_data", "title": "Load sample data", "topics": [ "barrks_data" ] }, { "page": "barrks_labels", "title": "Get 'barrks' default legend labels", "topics": [ "barrks_labels" ] }, { "page": "bso_get_flight", "title": "Get flight of individuals (BSO only)", "topics": [ "bso_get_flight", "bso_get_flight_df", "bso_get_flight_rst" ] }, { "page": "bso_get_individuals", "title": "Get individuals (BSO only)", "topics": [ "bso_get_individuals", "bso_get_individuals_df", "bso_get_individuals_rst" ] }, { "page": "bso_plot_flight_diagram", "title": "Plot a flight diagram (BSO only)", "topics": [ "bso_plot_flight_diagram" ] }, { "page": "bso_plot_stage_diagram", "title": "Plot a stage diagram (BSO only)", "topics": [ "bso_plot_stage_diagram" ] }, { "page": "bso_translate_phenology", "title": "Translate BSO generated phenology", "topics": [ "bso_translate_phenology" ] }, { "page": "categorize_generations_rst", "title": "Make a numeric generations raster categorical", "topics": [ "categorize_generations_rst" ] }, { "page": "create_daylength_df", "title": "Create a data frame of day lengths", "topics": [ "create_daylength_df" ] }, { "page": "create_daylength_rst", "title": "Create day length rasters", "topics": [ "create_daylength_rst" ] }, { "page": "create_events", "title": "Create phenological events (onset/diapause/mortality)", "topics": [ "create_diapause", "create_events", "create_mortality", "create_onset" ] }, { "page": "create_suntimes_df", "title": "Create a data frame of sunrises and sunsets", "topics": [ "create_suntimes_df" ] }, { "page": "create_suntimes_rsts", "title": "Create rasters that indicate sunrise and sunset", "topics": [ "create_suntimes_rsts" ] }, { "page": "get_development", "title": "Get the beetles development", "topics": [ "get_development", "get_development_df", "get_development_rst" ] }, { "page": "get_generations", "title": "Get generations", "topics": [ "get_generations", "get_generations_df", "get_generations_rst", "get_hibernating_generations_df", "get_hibernating_generations_rst" ] }, { "page": "get_input_data", "title": "Get (preprocessed) input data", "topics": [ "get_input_data" ] }, { "page": "get_events", "title": "Get onset, diapause or mortality", "topics": [ "get_diapause", "get_diapause_df", "get_diapause_rst", "get_events", "get_mortality", "get_mortality_df", "get_mortality_rst", "get_onset", "get_onset_df", "get_onset_rst" ] }, { "page": "list_models", "title": "List all models", "topics": [ "list_models" ] }, { "page": "model", "title": "Get a phenology model", "topics": [ "model" ] }, { "page": "model_combine", "title": "Combine different (sub-)models", "topics": [ "model_combine" ] }, { "page": "model.bso.apply", "title": "Use BSO", "concept": [ "phenology applications" ], "topics": [ "model.bso.apply" ] }, { "page": "model.bso.customize", "title": "Customize BSO", "concept": [ "model customizations" ], "topics": [ "model.bso.customize" ] }, { "page": "model.chapy.apply", "title": "Use CHAPY", "concept": [ "phenology applications" ], "topics": [ "model.chapy.apply" ] }, { "page": "model.chapy.customize", "title": "Customize CHAPY", "concept": [ "model customizations" ], "topics": [ "model.chapy.customize" ] }, { "page": "model.joensson.apply", "title": "Use the Jönnson model", "concept": [ "phenology applications" ], "topics": [ "model.joensson.apply" ] }, { "page": "model.joensson.customize", "title": "Customize the Jönsson model", "concept": [ "model customizations" ], "topics": [ "model.joensson.customize" ] }, { "page": "model.lange.apply", "title": "Use the Lange model", "concept": [ "phenology applications" ], "topics": [ "model.lange.apply" ] }, { "page": "model.lange.customize", "title": "Customize the Lange model", "concept": [ "model customizations" ], "topics": [ "model.lange.customize" ] }, { "page": "model.phenips_clim.apply", "title": "Use PHENIPS-Clim", "concept": [ "phenology applications" ], "topics": [ "model.phenips_clim.apply" ] }, { "page": "model.phenips_clim.customize", "title": "Customize PHENIPS-Clim", "concept": [ "model customizations" ], "topics": [ "model.phenips_clim.customize" ] }, { "page": "model.phenips.apply", "title": "Use PHENIPS", "concept": [ "phenology applications" ], "topics": [ "model.phenips.apply" ] }, { "page": "model.phenips.customize", "title": "Customize PHENIPS", "concept": [ "model customizations" ], "topics": [ "model.phenips.customize" ] }, { "page": "model.rity.apply", "title": "Use RITY", "concept": [ "phenology applications" ], "topics": [ "model.rity.apply" ] }, { "page": "model.rity.customize", "title": "Customize RITY", "concept": [ "model customizations" ], "topics": [ "model.rity.customize" ] }, { "page": "params", "title": "Get model parameters", "topics": [ "params" ] }, { "page": "phenology", "title": "Central function to calculate a phenology", "topics": [ "bso_phenology", "phenology" ] }, { "page": "plot_development_diagram", "title": "Plot a development diagram", "topics": [ "plot_development_diagram" ] }, { "page": "properties", "title": "Get phenology properties", "topics": [ "properties", "prop_dates", "prop_filial_generations", "prop_first_date", 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